Assay type 'Transcriptomics'

Experimental Assay Type
Current Assay type

Current Assay type

Transcriptomics
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Cell Count (0) | Comparative Genomic Hybridization (0) | Gene Expression Profiling (0) | Methylation Profiling (0) | MicroRNA Profiling (0) | RNA-seq Profiling (0) | RNAi (0) | Tiling Path (0) | Transcriptional Analysis (0)

Related assays

44 Assays visible to you, out of a total of 67

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Histone Deacetylase 9 Activates IKK to Regulate...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Histone deacetylase 9 promotes vascular inflamm...

Snapshots: No snapshots

Created: 29th May 2024 at 11:38, Last updated: 11th Oct 2024 at 13:16

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Microglia in white matter aging

Organisms: Mus musculus

SOPs: No SOPs

Data files: White matter aging drives microglial diversity

Snapshots: No snapshots

Created: 27th Jun 2024 at 11:55, Last updated: 11th Oct 2024 at 09:07

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Oligodendrocytes in white matter aging

Organisms: Mus musculus

SOPs: No SOPs

Data files: CD8+ T cells induce interferon-responsive oligo...

Snapshots: No snapshots

Created: 27th Jun 2024 at 12:00, Last updated: 11th Oct 2024 at 09:12

Expression profiling: Spatial Transcriptomics correlated Electron Microscopy (mouse)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Technology Type

Investigation: Transcriptomics (Published)

Study: Spatial Transcriptomics-correlated Electron Mic...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Spatial Transcriptomics correlated Electron Mic...

Snapshots: No snapshots

Created: 27th Jun 2024 at 12:04, Last updated: 16th Oct 2024 at 07:42

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Myelin degeneration in leucodystrophies

Organisms: Mus musculus

SOPs: No SOPs

Data files: Genetically perturbed myelin as a risk factor f...

Snapshots: No snapshots

Created: 27th Jun 2024 at 12:06, Last updated: 11th Oct 2024 at 10:04

Expression profiling: MERFISH Spatial Transcriptomics (mouse)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Oligodendrocytes in AD models

Organisms: Mus musculus

SOPs: No SOPs

Data files: T cell mediated microglia activation triggers m...

Snapshots: No snapshots

Created: 27th Jun 2024 at 12:08, Last updated: 14th Oct 2024 at 14:34

Expression profiling: scRNA-seq (human)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Early adaptive immune activation detected in mo...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Single-cell RNA-seq in monozygotic twins discor...

Snapshots: No snapshots

Created: 28th Jun 2024 at 08:45, Last updated: 11th Oct 2024 at 07:52

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Phagocyte-mediated synapse removal in cortical ...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Local calcium accumulations promote phagocyte-m...

Snapshots: No snapshots

Created: 28th Jun 2024 at 08:56, Last updated: 11th Oct 2024 at 08:51

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: T cells modulate the microglial response to bra...

Organisms: Mus musculus

SOPs: No SOPs

Data files: T cells modulate the microglial response to bra...

Snapshots: No snapshots

Created: 5th Jul 2024 at 09:45, Last updated: 14th Oct 2024 at 12:47

Expression profiling: Bulk RNA-seq (human)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Direct neuronal reprogramming of NDUFS4 patient...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Unfolded protein Response is a major hurdle in ...

Snapshots: No snapshots

Created: 8th Jul 2024 at 10:51, Last updated: 11th Oct 2024 at 13:00

Expression profiling: scRNA-seq (human) (Day 5)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Direct neuronal reprogramming of NDUFS4 patient...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Unfolded protein Response is a major hurdle in ...

Snapshots: No snapshots

Created: 8th Jul 2024 at 10:53, Last updated: 11th Oct 2024 at 13:05

Expression profiling: scRNA-seq (human) (Day 20)

Published Datasets

No description specified

Submitter: Rainer Malik

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Direct neuronal reprogramming of NDUFS4 patient...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Unfolded protein Response is a major hurdle in ...

Snapshots: No snapshots

Created: 8th Jul 2024 at 10:54, Last updated: 11th Oct 2024 at 13:05

Expression profiling: scRNA-seq (human)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Skin and gut imprinted helper T cell subsets ex...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: CSF CD4+ T cells in MS

Snapshots: No snapshots

Created: 10th Oct 2024 at 13:53, Last updated: 11th Oct 2024 at 07:52

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Skin and gut imprinted helper T cell subsets ex...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Tracking of CD4+ T cells during CNS autoimmunity

Snapshots: No snapshots

Created: 10th Oct 2024 at 13:54, Last updated: 10th Oct 2024 at 14:08

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Skin and gut imprinted helper T cell subsets ex...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Skin and gut imprinted T helper cell subsets ex...

Snapshots: No snapshots

Created: 10th Oct 2024 at 13:55, Last updated: 10th Oct 2024 at 14:12

Expression profiling: scRNA-seq (human)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: A genome-wide in vivo CRISPR screen identifies ...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: scRNAseq of blood and CSF CD4+ T cells from MS ...

Snapshots: No snapshots

Created: 11th Oct 2024 at 07:56, Last updated: 11th Oct 2024 at 08:39

Expression profiling: Bulk RNA-seq (rat)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: A genome-wide in vivo CRISPR screen identifies ...

Organisms: Rattus norvegicus

SOPs: No SOPs

Data files: Effect of Grk2 (spleen, rat) or Ets1 (spleen an...

Snapshots: No snapshots

Created: 11th Oct 2024 at 08:33, Last updated: 11th Oct 2024 at 08:42

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Microglia in white matter aging

Organisms: Mus musculus

SOPs: No SOPs

Data files: White matter aging drives microglial diversity

Snapshots: No snapshots

Created: 11th Oct 2024 at 09:03, Last updated: 11th Oct 2024 at 09:07

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Oligodendrocytes in AD models

Organisms: Mus musculus

SOPs: No SOPs

Data files: T cell mediated microglia activation triggers m...

Snapshots: No snapshots

Created: 11th Oct 2024 at 10:19, Last updated: 11th Oct 2024 at 10:21

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Innate immune memory after brain injury drives ...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Innate immune memory after brain injury drives ..., Innate immune memory after brain injury drives ..., Innate immune memory after brain injury drives ..., Innate immune memory after brain injury drives ...

Snapshots: No snapshots

Created: 14th Oct 2024 at 12:18, Last updated: 14th Oct 2024 at 15:56

Expression profiling: Bulk RNA-seq (human)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Innate immune memory after brain injury drives ...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Innate immune memory after brain injury drives ...

Snapshots: No snapshots

Created: 14th Oct 2024 at 12:32, Last updated: 14th Oct 2024 at 15:55

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Spatial centrosome proteome of human neural cel...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Spatial centrosome proteome of human neural cel...

Snapshots: No snapshots

Created: 14th Oct 2024 at 13:07, Last updated: 14th Oct 2024 at 15:48

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Heterogeneity of neurons reprogrammed from spin...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Early induction of neurogenic program by Ascl1E..., Transcriptional profile (RNA-seq) of cultured a...

Snapshots: No snapshots

Created: 14th Oct 2024 at 13:19, Last updated: 14th Oct 2024 at 15:48

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Heterogeneity of neurons reprogrammed from spin...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Single cell RNA-seq analysis of astrocyte to ne..., Single cell RNA-seq analysis of reprogrammed ne...

Snapshots: No snapshots

Created: 14th Oct 2024 at 13:27, Last updated: 14th Oct 2024 at 15:47

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Molecular diversity of diencephalic astrocytes ...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Proliferation and neural stem cell potential of...

Snapshots: No snapshots

Created: 14th Oct 2024 at 13:37, Last updated: 14th Oct 2024 at 15:47

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Molecular diversity of diencephalic astrocytes ...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Diverse gene expression of diencephalon astrocy..., Proliferation and neural stem cell potential of...

Snapshots: No snapshots

Created: 14th Oct 2024 at 13:39, Last updated: 14th Oct 2024 at 15:46

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Shared inflammatory glial cell signature after ...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Shared inflammatory glial cell signature after ...

Snapshots: No snapshots

Created: 14th Oct 2024 at 14:25, Last updated: 14th Oct 2024 at 15:46

Expression profiling: Spatial Transcriptomics (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Shared inflammatory glial cell signature after ...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Shared inflammatory glial cell signature after ...

Snapshots: No snapshots

Created: 14th Oct 2024 at 14:28, Last updated: 14th Oct 2024 at 15:46

Expression profiling: Microarray (zebrafish)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Microarray

Investigation: Transcriptomics (Published)

Study: Innate Immune Pathways Promote Oligodendrocyte ...

Organisms: Danio rerio

SOPs: No SOPs

Data files: Activation of innate immune pathways after brai...

Snapshots: No snapshots

Created: 14th Oct 2024 at 14:44, Last updated: 14th Oct 2024 at 15:40

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Parkinson's disease motor symptoms rescue by CR...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Rescuing voluntary motor behavior in a Parkinso...

Snapshots: No snapshots

Created: 14th Oct 2024 at 15:20, Last updated: 14th Oct 2024 at 15:43

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Adult neural stem cell activation in mice is re...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Live imaging in freely behaving mice reveals th...

Snapshots: No snapshots

Created: 14th Oct 2024 at 15:34, Last updated: 14th Oct 2024 at 15:42

Expression profiling: small RNA-seq (mouse)

Published Datasets

Comparative small RNA expression profiling analysis for four transgenic mouse models ( C9orf72, SOD1, TDP-43 and FUS) of ALS with each 5 males/females and 5 case/control samples. For FUS one male control sample was excluded.

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Multiomic ALS signatures highlight subclusters ...

Organisms: Mus musculus

SOPs: No SOPs

Data files: [miRNA-Seq] Multiomic Profile Integration Revea...

Snapshots: No snapshots

Created: 25th Oct 2024 at 09:33, Last updated: 18th Dec 2024 at 16:03

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

Comparative gene expression profiling analysis of RNA-seq data for four transgenic mouse models ( C9orf72, SOD1, TDP-43 and FUS) of ALS with each 5 males/females and 5 case/control samples. For FUS one male control sample was excluded.

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Multiomic ALS signatures highlight subclusters ...

Organisms: Mus musculus

SOPs: No SOPs

Data files: [RNA-Seq] Multiomic Profile Integration Reveals...

Snapshots: No snapshots

Created: 25th Oct 2024 at 09:35, Last updated: 18th Dec 2024 at 16:03

Expression profiling: Bulk RNA-seq (human)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Multiomic ALS signatures highlight subclusters ...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Transcriptomics dataset from human prefrontal c...

Snapshots: No snapshots

Created: 25th Oct 2024 at 09:50, Last updated: 18th Dec 2024 at 16:03

Expression profiling: small RNA-seq (human)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Multiomic ALS signatures highlight subclusters ...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Small RNA sequencing dataset from human prefron...

Snapshots: No snapshots

Created: 25th Oct 2024 at 09:51, Last updated: 18th Dec 2024 at 16:03

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Peripheral expression of brain-penetrant progra...

Organisms: Mus musculus

SOPs: No SOPs

Data files: [DKO study] Rescue of TDP-43 and neuronal patho..., [Grn KO study] Gene expression profile of brain...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 09:50, Last updated: 2nd Dec 2024 at 09:59

Expression profiling: Bulk RNA-seq (human) + smallRNA-seq (human)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Multi‐omic landscaping of human midbrains ident...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: RNA Sequencing datasets - Project "Multi-omics ...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 10:24, Last updated: 18th Dec 2024 at 16:03

Expression profiling: Small RNA-seq (human)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: MicroRNAs from extracellular vesicles as a sign...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Small RNA sequencing from CSF extracellular ves...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 10:49, Last updated: 18th Dec 2024 at 16:03

Expression profiling: scRNA-seq (mouse) + Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Distinct molecular profiles of skull bone marro...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Multi-omics and 3D-imaging reveal bone heteroge...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 13:04, Last updated: 18th Dec 2024 at 16:03

Expression profiling: Bulk RNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Diet triggers specific responses of hypothalami...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Gene expression profile of astrocytes derived f...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 13:16, Last updated: 18th Dec 2024 at 16:03

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Diet triggers specific responses of hypothalami...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Gene expression profile at single cell level of...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 13:18, Last updated: 18th Dec 2024 at 16:03

Expression profiling: scRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: High-calorie diets uncouple hypothalamic oxytoc...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Gene expression profiles at the single nuclei l...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 13:25, Last updated: 18th Dec 2024 at 16:03

Expression profiling: RiboTag-mRNA-seq (mouse)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: High-calorie diets uncouple hypothalamic oxytoc...

Organisms: Mus musculus

SOPs: No SOPs

Data files: Effect of CCK-8s injection (20 ug/kg BW i.p.) o...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 13:28, Last updated: 18th Dec 2024 at 16:03

Expression profiling: scRNA-seq (human)

Published Datasets

No description specified

Submitter: Aditi Methi

Assay type: Transcriptomics

Technology type: Sequencing

Investigation: Transcriptomics (Published)

Study: Twin study identifies early immunological and m...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Twin study identifies early immunological and m...

Snapshots: No snapshots

Created: 2nd Dec 2024 at 13:39, Last updated: 18th Dec 2024 at 16:03

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